redback.likelihoods.GaussianLikelihoodUniformXErrors
- class redback.likelihoods.GaussianLikelihoodUniformXErrors(*args: Any, **kwargs: Any)[source]
Bases:
GaussianLikelihood
- __init__(x: ndarray, y: ndarray, sigma: Union[float, None, ndarray], bin_size: Union[float, None, ndarray], function: callable, kwargs: Optional[dict] = None, priors=None, fiducial_parameters=None) None [source]
A general Gaussian likelihood with uniform errors in x- the parameters are inferred from the arguments of function. Takes into account the X errors with a Uniform likelihood between the bin high and bin low values. Note that the prior for the true x values must be uniform in this range!
- Parameters:
x (np.ndarray) – The x values.
y (np.ndarray) – The y values.
sigma (Union[float, None, np.ndarray]) – The standard deviation of the noise.
bin_size (Union[float, None, np.ndarray]) – The bin sizes.
function (callable) – The python function to fit to the data. Note, this must take the dependent variable as its first argument. The other arguments are will require a prior and will be sampled over (unless a fixed value is given).
kwargs (dict) – Any additional keywords for ‘function’.
priors – The priors for the parameters. Default to None if not provided.
Only necessary if using maximum likelihood estimation functionality. :type priors: Union[dict, None] :param fiducial_parameters: The starting guesses for model parameters to use in the optimization for maximum likelihood estimation. Default to None if not provided. :type fiducial_parameters: Union[dict, None]
- __call__(*args: Any, **kwargs: Any) Any
Call self as a function.
Methods
__init__
(x, y, sigma, bin_size, function[, ...])A general Gaussian likelihood with uniform errors in x- the parameters are inferred from the arguments of function.
Estimate the maximum likelihood
get_bounds_from_priors
(priors)get_parameter_dictionary_from_list
(...)get_parameter_list_from_dictionary
(...)lnlike_scipy_maximize
(parameter_list)- return:
The log-likelihood.
- return:
The log-likelihood due to x-errors.
- return:
The log-likelihood due to y-errors.
- return:
The noise log-likelihood, i.e. the log-likelihood assuming the signal is just noise.
Attributes
kwargs
Length of the x/y-values :rtype: int
parameters_to_be_updated
residual
sigma
- find_maximum_likelihood_parameters(iterations=5, maximization_kwargs=None, method='Nelder-Mead', break_threshold=0.001)
Estimate the maximum likelihood
- Parameters:
iterations – Iterations to run the minimizer for before stopping. Default is 5.
maximization_kwargs – Any extra keyword arguments passed to the scipy minimize function
method – Minimize method to use. Default is ‘Nelder-Mead’
break_threshold – The threshold for the difference in log likelihood to break the loop. Default is 1e-3.
- Returns:
Dictionary of maximum likelihood parameters
- property n: int
Length of the x/y-values :rtype: int
- Type:
return